I've just read back through your previous posts. Ignoring the description of a knocking noise ... In my experience whenever anyone says "knocking noise" on a car forum it's very each to reach for the "Your big end's gone mate" drama, when we all have a different interpretation of what actually constitutes a knocking noise.
If it's really pronounced then that's the issue and it could be serious. Otherwise it could just be a byproduct of a temporary fault.
So it seems over the last X months you've changed the intake manifold, put a copy of a Weber DGEV on (32/36? and an electronic choke?) and you've tackled the coolant system.
Based on this, my first guesses would be (and again I'm ignoring the "knocking" reference here) that maybe you've developed a leak at the intake manifold, or the servo is faltering (mine went earlier this year and your description above is very similar to what I experienced) or there's something gone wrong with the carb.
One thing you can try is to remove the servo hose from the servo (it runs from the servo to the intake manifold) and block it off with a bolt, then see of the car runs easier. Check your brake fluid level and see if that's dropped significantly too. If you do disconnect your servo hose beware the brakes will probably feel very different!
Have you overtightened the carb and it's started to warp the base allowing air to seep in?
Have you checked the choke to make sure it fully opens and closes as it should?
If it's stuck ajar and can't operate properly it will make starting groggy and will also make running lumpy once worm.
Maybe as a stage 1 you might want to get the car idling without the air filter on and blast carb cleaner into the carb throat, and spray WD40 around the carb base and the intake manifold while its running to to see if that changes the idle revs. Also inspect all the choke and throttle movements and give them a clean too.
Maybe your timing has slipped and you need to get the timing gun on it.
Maybe your vacuum advance pipe has come off, split, or has a little hole in it.
Press on all of your HT leads and king lead. Maybe you haven't reconnected them properly after doing something. Maybe you've got a badly fouled plug and you're running one three cylinders or you have a dirty spark.
Maybe your coil is breaking up.
Maybe you have oil leaking onto the clutch assembly. Does it seem to need much higher revs to make the car get up to speed?
It could be a tonne of things really.
It would be better to assume/hope the knocking is merely a by-product of an engine not running right... unless it's a really dramatic knocking which cannot be ignored.